PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G076000.1
Common NameB456_003G076000, LOC105788182
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 843aa    MW: 92169.8 Da    PI: 5.0339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G076000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000146386761355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLr ++P++    +k ls    Le++++Y+  Lq
  Gorai.003G076000.1 638 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 676
                         67799************9....788**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-71048IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142155.3E-1458150IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.248625675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII  120
SLGRQGMVQV GSTQKILERL DFLDETKKIF CGVGSFHGFT PLEIEACNQD DRFAALGSRG  180
NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS  240
NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND  300
LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL  360
QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA  420
LVGGDTLVDI PVRQTANSLQ SSTTEASISN AEKSTIVHDN GTDLFDGVGI DYAFGKTGES  480
LEDIIVPLLH GDNSTVTSGL SETISQLDAR AMNGKRKGLF SELGLEKLLD GVNNSSHATK  540
SSVEDQLSIT KRRKTESSSS SFCQGQFVGL SYSAGSMNPV HHSHTIFNKD IHRKSQVGAW  600
IDDSYSVNGG QAVAATSKKP AKKRAKPGES TRPRPKDRQL IQDRIKELRG IIPHNGKPLS  660
IDHLLEQTIK YLIFLQGVTK YADKIKQADE PKIIGNEDGM LPKHNMISGG ATWAFEVGAQ  720
SIPIVVKDLN PPGQMLIEML CEDQGFFLEI ANVIRGIGLN ILRAVMELQE DKIWARFIVE  780
AKEQVERTCI IWSLLPLLQQ TGGSGIDSAS QPSNDVNGGI PLSNNYLQPF PLPPLNTAET  840
FQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470397.10.0PREDICTED: transcription factor bHLH157-like
TrEMBLA0A0D2RIM10.0A0A0D2RIM1_G
STRINGVIT_02s0025g02310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1561549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-48conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]